Rhizosphere bacterial and fungal communities during the growth of Angelica sinensis seedlings cultivated in an Alpine uncultivated meadow soil
Identifieur interne : 000019 ( Main/Exploration ); précédent : 000018; suivant : 000020Rhizosphere bacterial and fungal communities during the growth of Angelica sinensis seedlings cultivated in an Alpine uncultivated meadow soil
Auteurs : Zhigang An [République populaire de Chine] ; Fengxia Guo [République populaire de Chine] ; Yuan Chen [République populaire de Chine] ; Gang Bai [République populaire de Chine] ; Zhengjun Chen [République populaire de Chine]Source :
- PeerJ [ 2167-8359 ] ; 2020.
Abstract
The bacterial and fungal communities were investigated by HiSeq sequencing of 16S and 18S rDNA, respectively.
Proteobacteria and Bacteroidetes were bacterial dominant phyla throughout growth stages. Fungal dominant phyla varied with growth stages, dominant phyla Ascomycota and Chytridiomycota in AM5, dominant phyla Basidiomycota, Ascomycota and Zygomycota in BM5, and dominant phyla Basidiomycota and Ascomycota in CM5. There was no significant variation in the alpha-diversity of the bacterial and fungal communities, but significant variation was in the beta-diversity. We found that the variation of microbial community composition was accompanied by the changes in community function. The relative abundance of fungal pathogens increased with plant growth. We also identified the core microbes, significant-changing microbes, stage-specific microbes, and host-specific microbes. Plant weight, root length, root diameter, soil pH, rainfall, and climate temperature were the key divers to microbial community composition.
Our findings reported the variation and environmental drivers of rhizosphere bacterial and fungal communities during the growth of
Url:
DOI: 10.7717/peerj.8541
PubMed: 32257632
PubMed Central: 7103203
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Rhizosphere bacterial and fungal communities during the growth of <italic>Angelica sinensis</italic> seedlings cultivated in an Alpine uncultivated meadow soil</title><author><name sortKey="An, Zhigang" sort="An, Zhigang" uniqKey="An Z" first="Zhigang" last="An">Zhigang An</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Pharmacy Department, Gansu University of Chinese Medicine</institution>,<addr-line>Dingxi</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Fengxia" sort="Guo, Fengxia" uniqKey="Guo F" first="Fengxia" last="Guo">Fengxia Guo</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Yuan" sort="Chen, Yuan" uniqKey="Chen Y" first="Yuan" last="Chen">Yuan Chen</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-3"><institution>Gansu Engineering Lab of Resource Reservation and Utilization for Characteristic Chinese Medicine, Gansu Tasly Zhongtian Pharmaceutical Co., 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Zhengjun" uniqKey="Chen Z" first="Zhengjun" last="Chen">Zhengjun Chen</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">32257632</idno><idno type="pmc">7103203</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7103203</idno><idno type="RBID">PMC:7103203</idno><idno type="doi">10.7717/peerj.8541</idno><date when="2020">2020</date><idno 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sortKey="An, Zhigang" sort="An, Zhigang" uniqKey="An Z" first="Zhigang" last="An">Zhigang An</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-2"><institution>Pharmacy Department, Gansu University of Chinese Medicine</institution>,<addr-line>Dingxi</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Guo, Fengxia" sort="Guo, Fengxia" uniqKey="Guo F" first="Fengxia" last="Guo">Fengxia Guo</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Yuan" sort="Chen, Yuan" uniqKey="Chen Y" first="Yuan" last="Chen">Yuan Chen</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff-3"><institution>Gansu Engineering Lab of Resource Reservation and Utilization for Characteristic Chinese Medicine, Gansu Tasly Zhongtian Pharmaceutical Co., Ltd.</institution>,<addr-line>Dingxi</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bai, Gang" sort="Bai, Gang" uniqKey="Bai G" first="Gang" last="Bai">Gang Bai</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Chen, Zhengjun" sort="Chen, Zhengjun" uniqKey="Chen Z" first="Zhengjun" last="Chen">Zhengjun Chen</name><affiliation wicri:level="1"><nlm:aff id="aff-1"><institution>College of Life Science and Technology, College of Agronomy, Gansu Provincial Key Lab of Good Agricultural Production for Traditional Chinese Medicine, Gansu Provincial Engineering Research Centre for Medical Plant Cultivation and Breeding, Provincial Key Lab of Aridland Crop Science, Gansu Agricultural University</institution>,<addr-line>Lanzhou</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">PeerJ</title><idno type="eISSN">2167-8359</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p><italic>Angelica sinensis</italic> seedlings are grown in alpine uncultivated meadow soil with rainfed agroecosystems to ensure the quality of <italic>A. sinensis</italic> after seedling transplantation. The aim was to investigate the rhizosphere bacterial and fungal communities during the growth stages of <italic>A. sinensis</italic> seedlings.</p></sec><sec><title>Methods</title><p>The bacterial and fungal communities were investigated by HiSeq sequencing of 16S and 18S rDNA, respectively.</p></sec><sec><title>Results</title><p>Proteobacteria and Bacteroidetes were bacterial dominant phyla throughout growth stages. Fungal dominant phyla varied with growth stages, dominant phyla Ascomycota and Chytridiomycota in AM5, dominant phyla Basidiomycota, Ascomycota and Zygomycota in BM5, and dominant phyla Basidiomycota and Ascomycota in CM5. There was no significant variation in the alpha-diversity of the bacterial and fungal communities, but significant variation was in the beta-diversity. We found that the variation of microbial community composition was accompanied by the changes in community function. The relative abundance of fungal pathogens increased with plant growth. We also identified the core microbes, significant-changing microbes, stage-specific microbes, and host-specific microbes. Plant weight, root length, root diameter, soil pH, rainfall, and climate temperature were the key divers to microbial community composition.</p></sec><sec><title>Conclusions</title><p>Our findings reported the variation and environmental drivers of rhizosphere bacterial and fungal communities during the growth of <italic>A. sinensis</italic> seedlings, which enhance the understanding of the rhizosphere microbial community in this habitat.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Adrangi, S" uniqKey="Adrangi S">S Adrangi</name></author><author><name sortKey="Faramarzi, Ma" uniqKey="Faramarzi M">MA Faramarzi</name></author><author><name sortKey="Shahverdi, Ar" uniqKey="Shahverdi A">AR Shahverdi</name></author><author><name sortKey="Sepehrizadeh, Z" uniqKey="Sepehrizadeh Z">Z Sepehrizadeh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Albu, S" uniqKey="Albu S">S 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Zhang</name></author><author><name sortKey="Vivanco, Jm" uniqKey="Vivanco J">JM Vivanco</name></author><author><name sortKey="Shen, Q" uniqKey="Shen Q">Q Shen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, S" uniqKey="Zhu S">S Zhu</name></author><author><name sortKey="Wang, Y" uniqKey="Wang Y">Y Wang</name></author><author><name sortKey="Xu, X" uniqKey="Xu X">X Xu</name></author><author><name sortKey="Liu, T" uniqKey="Liu T">T Liu</name></author><author><name sortKey="Wu, D" uniqKey="Wu D">D Wu</name></author><author><name sortKey="Zheng, X" uniqKey="Zheng X">X Zheng</name></author><author><name sortKey="Tang, S" uniqKey="Tang S">S Tang</name></author><author><name sortKey="Dai, Q" uniqKey="Dai Q">Q Dai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zimudzi, J" uniqKey="Zimudzi J">J Zimudzi</name></author><author><name sortKey="Van Der Waals, Je" uniqKey="Van Der Waals J">JE Van Der Waals</name></author><author><name sortKey="Coutinho, Ta" uniqKey="Coutinho T">TA Coutinho</name></author><author><name sortKey="Cowan, Da" uniqKey="Cowan D">DA Cowan</name></author><author><name sortKey="Valverde, A" uniqKey="Valverde A">A Valverde</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="An, Zhigang" sort="An, Zhigang" uniqKey="An Z" first="Zhigang" last="An">Zhigang An</name></noRegion><name sortKey="An, Zhigang" sort="An, Zhigang" uniqKey="An Z" first="Zhigang" last="An">Zhigang An</name><name sortKey="Bai, Gang" sort="Bai, Gang" uniqKey="Bai G" first="Gang" last="Bai">Gang Bai</name><name sortKey="Chen, Yuan" sort="Chen, Yuan" uniqKey="Chen Y" first="Yuan" last="Chen">Yuan Chen</name><name sortKey="Chen, Yuan" sort="Chen, Yuan" uniqKey="Chen Y" first="Yuan" last="Chen">Yuan Chen</name><name sortKey="Chen, Zhengjun" sort="Chen, Zhengjun" uniqKey="Chen Z" first="Zhengjun" last="Chen">Zhengjun Chen</name><name sortKey="Guo, Fengxia" sort="Guo, Fengxia" uniqKey="Guo F" first="Fengxia" last="Guo">Fengxia Guo</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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